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de Rop, F. V., Ismail, J. N., González-Blas, C. B., Hulselmans, G. J., Flerin, C. C., Janssens, J., Theunis, K., Christiaens, V. M., Wouters, J., Marcassa, G., de Wit, J., Poovathingal, S., & Aerts, S. Elife, 11, e73971. 2022

Simmons, A.J. and Lau, K.S., STAR Protocols, 3(3), p.101570. 2022

Luciunaite, A., Dalgediene, I., Zilionis, R., Masalaite, K., Norkiene, M., Sinkunas, A., Gedvilaite, A., Kucinskaite-Kodze, I. & Zvirbliene, A. Front. Immunol. 13:831815. 2022

Azizi, E., Carr, A. J., Plitas, G., Cornish, A. E., Konopacki, C., Prabhakaran, S., Nainys, J., Wu, K., Kiseliovas, K., Setty, M., Choi, K., Fromme, R. M., Dao, P., McKenney, P. T., Wasti, R. C., Kadaveru, K., Mazutis, L., Rudensky, A. Y., & Pe'er, D. Cell, 174(5), 1293-1308. 2018

Zilionis, R., Nainys, J., Veres, A., Savova, V., Zemmour, D., Klein, A. M., & Mazutis, L. Nature protocols, 12(1), 44. 2017

Liu, J., Banerjee, A., Herring, C. A., Attalla, J., Hu, R., Xu, Y., Shao, Q., Simmons, A. J., Dadi, P. K., Wang, S., Jacobson, D. A., Liu, B., Hodges, E., Lau, K. S., & Gu, G. Developmental Cell, 48(1), 49–63.e7. 2019

Van Dijk, D., Sharma, R., Nainys, J., Yim, K., Kathail, P., Carr, A. J., Burdziak, C., Moon, K. R., Chaffer, C. L., Pattabiraman, D., Bierie, B., Mazutis, L., Wolf, G., Krishnaswamy, S., & Pe'er, D. Cell, 174(3), 716-729. 2018

Basu, A., Budhraja, A., Abhilash, D., & Gupta, I. Advances in genetics, 108, 81-145. 2021

He, Z., Brazovskaja, A., Ebert, S., Camp, J. G., & Treutlein, B. Genome biology, 21(1), 1-21. 2020